ASICS

DOI: 10.18129/B9.bioc.ASICS    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see ASICS.

Automatic Statistical Identification in Complex Spectra

Bioconductor version: 3.14

With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) .

Author: Gaëlle Lefort [aut, cre], Rémi Servien [aut], Patrick Tardivel [aut], Nathalie Vialaneix [aut]

Maintainer: Gaëlle Lefort <gaelle.lefort at inra.fr>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASICS")

 

HTML	R Script	ASICS
HTML	R Script	ASICS
PDF		Reference Manual
Text		NEWS

Details

biocViews	Cheminformatics, DataImport, Metabolomics, Software
Version	2.10.0
In Bioconductor since	BioC 3.7 (R-3.5) (4 years)
License	GPL (>= 2)
Depends	R (>= 3.5)
Imports	BiocParallel, ggplot2, glmnet, grDevices, gridExtra, methods, mvtnorm, PepsNMR, plyr, quadprog, ropls, stats, SummarizedExperiment, utils, Matrix, zoo
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, testthat, ASICSdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ASICS_2.10.0.tar.gz
Windows Binary	ASICS_2.10.0.zip
macOS 10.13 (High Sierra)	ASICS_2.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ASICS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ASICS
Package Short Url	https://bioconductor.org/packages/ASICS/
Package Downloads Report	Download Stats