CGHnormaliter

DOI: 10.18129/B9.bioc.CGHnormaliter    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see CGHnormaliter.

Normalization of array CGH data with imbalanced aberrations.

Bioconductor version: 3.14

Normalization and centralization of array comparative genomic hybridization (aCGH) data. The algorithm uses an iterative procedure that effectively eliminates the influence of imbalanced copy numbers. This leads to a more reliable assessment of copy number alterations (CNAs).

Author: Bart P.P. van Houte, Thomas W. Binsl, Hannes Hettling

Maintainer: Bart P.P. van Houte <bvhoute at few.vu.nl>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CGHnormaliter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CGHnormaliter")

 

PDF	R Script	CGHnormaliter
PDF		Reference Manual

Details

biocViews	Microarray, Preprocessing, Software
Version	1.48.0
In Bioconductor since	BioC 2.5 (R-2.10) (12.5 years)
License	GPL (>= 3)
Depends	CGHcall(>= 2.17.0), CGHbase(>= 1.15.0)
Imports	Biobase, CGHbase, CGHcall, methods, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CGHnormaliter_1.48.0.tar.gz
Windows Binary	CGHnormaliter_1.48.0.zip
macOS 10.13 (High Sierra)	CGHnormaliter_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CGHnormaliter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CGHnormaliter
Package Short Url	https://bioconductor.org/packages/CGHnormaliter/
Package Downloads Report	Download Stats