EnMCB

DOI: 10.18129/B9.bioc.EnMCB    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see EnMCB.

Predicting Disease Progression Based on Methylation Correlated Blocks using Ensemble Models

Bioconductor version: 3.14

Creation of the correlated blocks using DNA methylation profiles. A stacked ensemble of machine learning models, which combined the cox, support vector machine and elastic-net regression model, can be constructed to predict disease progression.

Author: Xin Yu

Maintainer: Xin Yu <whirlsyu at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("EnMCB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EnMCB")

 

HTML	R Script	vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DNAMethylation, MethylationArray, Normalization, Software, SupportVectorMachine
Version	1.6.0
In Bioconductor since	BioC 3.11 (R-4.0) (2 years)
License	GPL-2
Depends	R (>= 4.0)
Imports	foreach, doParallel, parallel, stats, survivalROC, glmnet, rms, mboost, survivalsvm, ggplot2, IlluminaHumanMethylation450kanno.ilmn12.hg19, minfi, boot, survival, utils
LinkingTo
Suggests	SummarizedExperiment, testthat, Biobase, survminer, affycoretools, knitr, plotROC, prognosticROC, rmarkdown
SystemRequirements
Enhances
URL
BugReports	https://github.com/whirlsyu/EnMCB/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EnMCB_1.6.0.tar.gz
Windows Binary	EnMCB_1.6.0.zip
macOS 10.13 (High Sierra)	EnMCB_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EnMCB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EnMCB
Package Short Url	https://bioconductor.org/packages/EnMCB/
Package Downloads Report	Download Stats