KCsmart

DOI: 10.18129/B9.bioc.KCsmart    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see KCsmart.

Multi sample aCGH analysis package using kernel convolution

Bioconductor version: 3.14

Multi sample aCGH analysis package using kernel convolution

Author: Jorma de Ronde, Christiaan Klijn, Arno Velds

Maintainer: Jorma de Ronde <j.d.ronde at nki.nl>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KCsmart")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KCsmart")

 

PDF	R Script	KCsmart example session
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software, Visualization, aCGH
Version	2.52.0
In Bioconductor since	BioC 2.3 (R-2.8) (13.5 years)
License	GPL-3
Depends	siggenes, multtest, KernSmooth
Imports	methods, BiocGenerics
LinkingTo
Suggests
SystemRequirements
Enhances	Biobase, CGHbase
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KCsmart_2.52.0.tar.gz
Windows Binary	KCsmart_2.52.0.zip
macOS 10.13 (High Sierra)	KCsmart_2.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/KCsmart
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KCsmart
Package Short Url	https://bioconductor.org/packages/KCsmart/
Package Downloads Report	Download Stats