PloGO2

DOI: 10.18129/B9.bioc.PloGO2    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see PloGO2.

Plot Gene Ontology and KEGG pathway Annotation and Abundance

Bioconductor version: 3.14

Functions for enrichment analysis and plotting gene ontology or KEGG pathway information for multiple data subsets at the same time. It also enables encorporating multiple conditions and abundance data.

Author: Dana Pascovici, Jemma Wu

Maintainer: Jemma Wu <jemma.wu at mq.edu.au>, Dana Pascovici <dana.pascovici at mq.edu.au>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PloGO2")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PloGO2")

 

PDF	R Script	PloGO2_vignette.pdf
PDF	R Script	PloGO2_with_WGNCA_vignette.pdf
PDF		Reference Manual

Details

biocViews	Annotation, Clustering, GO, GeneSetEnrichment, KEGG, MultipleComparison, Pathways, Software, Visualization
Version	1.6.0
In Bioconductor since	BioC 3.11 (R-4.0) (2 years)
License	GPL-2
Depends	R (>= 4.0), GO.db, GOstats
Imports	lattice, httr, openxlsx, xtable
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PloGO2_1.6.0.tar.gz
Windows Binary	PloGO2_1.6.0.zip
macOS 10.13 (High Sierra)	PloGO2_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PloGO2
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PloGO2
Package Short Url	https://bioconductor.org/packages/PloGO2/
Package Downloads Report	Download Stats