TRESS

DOI: 10.18129/B9.bioc.TRESS    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see TRESS.

Toolbox for mRNA epigenetics sequencing analysis

Bioconductor version: 3.14

This package is devoted to analyzing MeRIP-seq data. Current functionality is for detection of transcriptome-wide m6A methylation regions. The method is based on hierarchical negative binomial models.

Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]

Maintainer: Zhenxing Guo <zhenxing.guo at emory.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TRESS")

 

HTML	R Script	The TRESS User's Guide
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Epigenetics, PeakDetection, RNASeq, Software
Version	1.0.0
In Bioconductor since	BioC 3.14 (R-4.1) (< 6 months)
License	GPL-3 + file LICENSE
Depends	R (>= 4.1.0), parallel, S4Vectors
Imports	utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TRESS_1.0.0.tar.gz
Windows Binary	TRESS_1.0.0.zip
macOS 10.13 (High Sierra)	TRESS_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TRESS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TRESS
Package Short Url	https://bioconductor.org/packages/TRESS/
Package Downloads Report	Download Stats