biodbKegg

DOI: 10.18129/B9.bioc.biodbKegg    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see biodbKegg.

biodbKegg, a library for connecting to the KEGG Database

Bioconductor version: 3.14

The biodbKegg library is an extension of the biodb framework package that provides access to the KEGG databases Compound, Enzyme, Genes, Module, Orthology and Reaction. It allows to retrieve entries by their accession numbers. Web services like "find", "list" and "findExactMass" are also available. Some functions for navigating along the pathways have also been implemented.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbKegg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbKegg")

 

HTML	R Script	Introduction to the biodbKegg package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, KEGG, Pathways, Software
Version	1.0.0
In Bioconductor since	BioC 3.14 (R-4.1) (< 6 months)
License	AGPL-3
Depends	R (>= 4.1)
Imports	R6, biodb(>= 1.1.9), chk, lifecycle
LinkingTo
Suggests	BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, igraph, magick, lgr
SystemRequirements
Enhances
URL	https://github.com/pkrog/biodbKegg
BugReports	https://github.com/pkrog/biodbKegg/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biodbKegg_1.0.0.tar.gz
Windows Binary	biodbKegg_1.0.0.zip
macOS 10.13 (High Sierra)	biodbKegg_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biodbKegg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biodbKegg
Package Short Url	https://bioconductor.org/packages/biodbKegg/
Package Downloads Report	Download Stats