brainflowprobes

DOI: 10.18129/B9.bioc.brainflowprobes    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see brainflowprobes.

Plots and annotation for choosing BrainFlow target probe sequence

Bioconductor version: 3.14

Use these functions to characterize genomic regions for BrainFlow target probe design.

Author: Amanda Price [aut, cre] , Leonardo Collado-Torres [ctb]

Maintainer: Amanda Price <amanda.joy.price at gmail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("brainflowprobes")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("brainflowprobes")

 

HTML	R Script	brainflowprobes users guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, ExperimentalDesign, FlowCytometry, GeneTarget, Software, Transcriptomics, Visualization
Version	1.8.0
In Bioconductor since	BioC 3.10 (R-3.6) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.6.0)
Imports	Biostrings(>= 2.52.0), BSgenome.Hsapiens.UCSC.hg19(>= 1.4.0), bumphunter(>= 1.26.0), cowplot (>= 1.0.0), derfinder(>= 1.18.1), derfinderPlot(>= 1.18.1), GenomicRanges(>= 1.36.0), ggplot2 (>= 3.1.1), RColorBrewer (>= 1.1), utils, grDevices, GenomicState(>= 0.99.7)
LinkingTo
Suggests	BiocStyle, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 2.1.0), covr
SystemRequirements
Enhances
URL	https://github.com/LieberInstitute/brainflowprobes
BugReports	https://support.bioconductor.org/t/brainflowprobes
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	brainflowprobes_1.8.0.tar.gz
Windows Binary	brainflowprobes_1.8.0.zip
macOS 10.13 (High Sierra)	brainflowprobes_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/brainflowprobes
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/brainflowprobes
Package Short Url	https://bioconductor.org/packages/brainflowprobes/
Package Downloads Report	Download Stats