cBioPortalData

DOI: 10.18129/B9.bioc.cBioPortalData    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see cBioPortalData.

Exposes and makes available data from the cBioPortal web resources

Bioconductor version: 3.14

The cBioPortalData package takes compressed resources from repositories such as cBioPortal and assembles a MultiAssayExperiment object with Bioconductor classes.

Author: Levi Waldron [aut], Marcel Ramos [aut, cre]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cBioPortalData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cBioPortalData")

 

HTML	R Script	cBioPortal Data Build Errors
HTML	R Script	cBioPortal Quick-start Guide
HTML	R Script	cBioPortal User Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software, ThirdPartyClient
Version	2.6.1
In Bioconductor since	BioC 3.11 (R-4.0) (2 years)
License	AGPL-3
Depends	R (>= 4.0.0), AnVIL, MultiAssayExperiment
Imports	BiocFileCache(>= 1.5.3), digest, dplyr, GenomeInfoDb, GenomicRanges, httr, IRanges, methods, readr, RaggedExperiment, RTCGAToolbox(>= 2.19.7), S4Vectors, SummarizedExperiment, stats, tibble, tidyr, TCGAutils(>= 1.9.4), utils
LinkingTo
Suggests	BiocStyle, knitr, survival, survminer, rmarkdown, testthat
SystemRequirements
Enhances
URL
BugReports	https://github.com/waldronlab/cBioPortalData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cBioPortalData_2.6.1.tar.gz
Windows Binary	cBioPortalData_2.6.1.zip
macOS 10.13 (High Sierra)	cBioPortalData_2.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cBioPortalData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cBioPortalData
Package Short Url	https://bioconductor.org/packages/cBioPortalData/
Package Downloads Report	Download Stats