sparseMatrixStats

DOI: 10.18129/B9.bioc.sparseMatrixStats    

This package is for version 3.14 of Bioconductor; for the stable, up-to-date release version, see sparseMatrixStats.

Summary Statistics for Rows and Columns of Sparse Matrices

Bioconductor version: 3.14

High performance functions for row and column operations on sparse matrices. For example: col / rowMeans2, col / rowMedians, col / rowVars etc. Currently, the optimizations are limited to data in the column sparse format. This package is inspired by the matrixStats package by Henrik Bengtsson.

Author: Constantin Ahlmann-Eltze [aut, cre]

Maintainer: Constantin Ahlmann-Eltze <artjom31415 at googlemail.com>

Installation

To install this package, start R (version "4.1") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sparseMatrixStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sparseMatrixStats")

 

HTML	R Script	sparseMatrixStats
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataRepresentation, Infrastructure, Software
Version	1.6.0
In Bioconductor since	BioC 3.11 (R-4.0) (2 years)
License	MIT + file LICENSE
Depends	MatrixGenerics(>= 1.5.3)
Imports	Rcpp, Matrix, matrixStats (>= 0.60.0), methods
LinkingTo	Rcpp
Suggests	testthat (>= 2.1.0), knitr, bench, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/const-ae/sparseMatrixStats
BugReports	https://github.com/const-ae/sparseMatrixStats/issues
Depends On Me
Imports Me	atena, DelayedMatrixStats, GSVA
Suggests Me	MatrixGenerics, scPCA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	sparseMatrixStats_1.6.0.tar.gz
Windows Binary	sparseMatrixStats_1.6.0.zip
macOS 10.13 (High Sierra)	sparseMatrixStats_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/sparseMatrixStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/sparseMatrixStats
Package Short Url	https://bioconductor.org/packages/sparseMatrixStats/
Package Downloads Report	Download Stats