GSRI

DOI: 10.18129/B9.bioc.GSRI    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see GSRI.

Gene Set Regulation Index

Bioconductor version: 3.15

The GSRI package estimates the number of differentially expressed genes in gene sets, utilizing the concept of the Gene Set Regulation Index (GSRI).

Author: Julian Gehring, Kilian Bartholome, Clemens Kreutz, Jens Timmer

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSRI")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSRI")

 

PDF	R Script	Introduction to the GSRI package: Estimating Regulatory Effects utilizing the Gene Set Regulation Index
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneRegulation, GeneSetEnrichment, Microarray, Software, Transcription
Version	2.44.0
In Bioconductor since	BioC 2.6 (R-2.11) (12.5 years)
License	GPL-3
Depends	R (>= 2.14.2), fdrtool
Imports	methods, graphics, stats, utils, genefilter, Biobase, GSEABase, les(>= 1.1.6)
LinkingTo
Suggests	limma, hgu95av2.db
SystemRequirements
Enhances	parallel
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSRI_2.44.0.tar.gz
Windows Binary	GSRI_2.44.0.zip (64-bit only)
macOS Binary (x86_64)	GSRI_2.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GSRI
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSRI
Package Short Url	https://bioconductor.org/packages/GSRI/
Package Downloads Report	Download Stats