Heatplus

DOI: 10.18129/B9.bioc.Heatplus    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see Heatplus.

Heatmaps with row and/or column covariates and colored clusters

Bioconductor version: 3.15

Display a rectangular heatmap (intensity plot) of a data matrix. By default, both samples (columns) and features (row) of the matrix are sorted according to a hierarchical clustering, and the corresponding dendrogram is plotted. Optionally, panels with additional information about samples and features can be added to the plot.

Author: Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Heatplus")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Heatplus")

 

PDF	R Script	Annotated and regular heatmaps
PDF	R Script	Commented package source
PDF	R Script	Old functions (deprecated)
PDF		Reference Manual
Text		NEWS

Details

biocViews	Microarray, Software, Visualization
Version	3.4.0
In Bioconductor since	BioC 1.8 (R-2.3) (16.5 years)
License	GPL (>= 2)
Depends
Imports	graphics, grDevices, stats, RColorBrewer
LinkingTo
Suggests	Biobase, hgu95av2.db, limma
SystemRequirements
Enhances
URL	https://github.com/alexploner/Heatplus
BugReports	https://github.com/alexploner/Heatplus/issues
Depends On Me	phenoTest, tRanslatome
Imports Me
Suggests Me	mtbls2, RforProteomics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Heatplus_3.4.0.tar.gz
Windows Binary	Heatplus_3.4.0.zip
macOS Binary (x86_64)	Heatplus_3.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Heatplus
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Heatplus
Package Short Url	https://bioconductor.org/packages/Heatplus/
Package Downloads Report	Download Stats