IHW

DOI: 10.18129/B9.bioc.IHW    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see IHW.

Independent Hypothesis Weighting

Bioconductor version: 3.15

Independent hypothesis weighting (IHW) is a multiple testing procedure that increases power compared to the method of Benjamini and Hochberg by assigning data-driven weights to each hypothesis. The input to IHW is a two-column table of p-values and covariates. The covariate can be any continuous-valued or categorical variable that is thought to be informative on the statistical properties of each hypothesis test, while it is independent of the p-value under the null hypothesis.

Author: Nikos Ignatiadis [aut, cre], Wolfgang Huber [aut]

Maintainer: Nikos Ignatiadis <nikos.ignatiadis01 at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("IHW")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IHW")

 

HTML	R Script	Introduction to IHW
PDF		Reference Manual

Details

biocViews	ImmunoOncology, MultipleComparison, RNASeq, Software
Version	1.24.0
In Bioconductor since	BioC 3.3 (R-3.3) (6.5 years)
License	Artistic-2.0
Depends	R (>= 3.3.0)
Imports	methods, slam, lpsymphony, fdrtool, BiocGenerics
LinkingTo
Suggests	ggplot2, dplyr, gridExtra, scales, DESeq2, airway, testthat, Matrix, BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL
Depends On Me	IHWpaper
Imports Me	ideal
Suggests Me	BloodCancerMultiOmics2017, DEWSeq, GRaNIE, metagenomeSeq, SummarizedBenchmark
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	IHW_1.24.0.tar.gz
Windows Binary	IHW_1.24.0.zip
macOS Binary (x86_64)	IHW_1.24.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/IHW
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/IHW
Package Short Url	https://bioconductor.org/packages/IHW/
Package Downloads Report	Download Stats