RTCA

DOI: 10.18129/B9.bioc.RTCA    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see RTCA.

Open-source toolkit to analyse data from xCELLigence System (RTCA)

Bioconductor version: 3.15

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

Author: Jitao David Zhang

Maintainer: Jitao David Zhang <davidvonpku at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCA")

 

PDF	R Script	Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package
PDF	R Script	RTCAtransformation: Discussion of transformation methods of RTCA data
PDF		Reference Manual

Details

biocViews	CellBasedAssays, ImmunoOncology, Infrastructure, Software, TimeCourse, Visualization
Version	1.48.0
In Bioconductor since	BioC 2.5 (R-2.10) (13 years)
License	LGPL-3
Depends	methods, stats, graphics, Biobase, RColorBrewer, gtools
Imports
LinkingTo
Suggests	xtable
SystemRequirements
Enhances
URL	http://code.google.com/p/xcelligence/ http://www.xcelligence.roche.com/ http://www.nextbiomotif.com/Home/scientific-programming
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RTCA_1.48.0.tar.gz
Windows Binary	RTCA_1.48.0.zip
macOS Binary (x86_64)	RTCA_1.48.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RTCA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTCA
Package Short Url	https://bioconductor.org/packages/RTCA/
Package Downloads Report	Download Stats