TDARACNE

DOI: 10.18129/B9.bioc.TDARACNE    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see TDARACNE.

Network reverse engineering from time course data.

Bioconductor version: 3.15

To infer gene networks from time-series measurements is a current challenge into bioinformatics research area. In order to detect dependencies between genes at different time delays, we propose an approach to infer gene regulatory networks from time-series measurements starting from a well known algorithm based on information theory. The proposed algorithm is expected to be useful in reconstruction of small biological directed networks from time course data.

Author: Zoppoli P.,Morganella S., Ceccarelli M.

Maintainer: Zoppoli Pietro <zoppoli.pietro at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TDARACNE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDARACNE")

 

PDF	R Script	TDARACNE
PDF		Reference Manual

Details

biocViews	Microarray, Software, TimeCourse
Version	1.46.0
In Bioconductor since	BioC 2.8 (R-2.13) (11.5 years)
License	GPL-2
Depends	GenKern, Rgraphviz, Biobase
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TDARACNE_1.46.0.tar.gz
Windows Binary	TDARACNE_1.46.0.zip
macOS Binary (x86_64)	TDARACNE_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TDARACNE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TDARACNE
Package Short Url	https://bioconductor.org/packages/TDARACNE/
Package Downloads Report	Download Stats