aCGH

DOI: 10.18129/B9.bioc.aCGH    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see aCGH.

Classes and functions for Array Comparative Genomic Hybridization data

Bioconductor version: 3.15

Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for storing these data. Basic methods for accessing/replacing, subsetting, printing and plotting aCGH objects.

Author: Jane Fridlyand <jfridlyand at cc.ucsf.edu>, Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Maintainer: Peter Dimitrov <dimitrov at stat.Berkeley.EDU>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aCGH")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("aCGH")

 

PDF	R Script	aCGH Overview
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, DataImport, Genetics, Software
Version	1.74.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 17.5 years)
License	GPL-2
Depends	R (>= 2.10), cluster, survival, multtest
Imports	Biobase, grDevices, graphics, methods, stats, splines, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	CRImage
Imports Me	ADaCGH2, rCGH, snapCGH
Suggests Me	beadarraySNP
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	aCGH_1.74.0.tar.gz
Windows Binary	aCGH_1.74.0.zip (64-bit only)
macOS Binary (x86_64)	aCGH_1.74.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/aCGH
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/aCGH
Package Short Url	https://bioconductor.org/packages/aCGH/
Package Downloads Report	Download Stats