cellbaseR

DOI: 10.18129/B9.bioc.cellbaseR    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see cellbaseR.

Querying annotation data from the high performance Cellbase web

Bioconductor version: 3.15

This R package makes use of the exhaustive RESTful Web service API that has been implemented for the Cellabase database. It enable researchers to query and obtain a wealth of biological information from a single database saving a lot of time. Another benefit is that researchers can easily make queries about different biological topics and link all this information together as all information is integrated.

Author: Mohammed OE Abdallah

Maintainer: Mohammed OE Abdallah <melsiddieg at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cellbaseR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cellbaseR")

 

HTML	R Script	Simplifying Genomic Annotations in R
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, Software, VariantAnnotation
Version	1.20.1
In Bioconductor since	BioC 3.5 (R-3.4) (5.5 years)
License	Apache License (== 2.0)
Depends	R (>= 3.4)
Imports	methods, jsonlite, httr, data.table, pbapply, tidyr, R.utils, Rsamtools, BiocParallel, foreach, utils, parallel, doParallel
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, Gviz, VariantAnnotation
SystemRequirements
Enhances
URL	https://github.com/melsiddieg/cellbaseR
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cellbaseR_1.20.1.tar.gz
Windows Binary	cellbaseR_1.20.1.zip
macOS Binary (x86_64)	cellbaseR_1.20.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cellbaseR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cellbaseR
Package Short Url	https://bioconductor.org/packages/cellbaseR/
Package Downloads Report	Download Stats