erccdashboard

DOI: 10.18129/B9.bioc.erccdashboard    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see erccdashboard.

Assess Differential Gene Expression Experiments with ERCC Controls

Bioconductor version: 3.15

Technical performance metrics for differential gene expression experiments using External RNA Controls Consortium (ERCC) spike-in ratio mixtures.

Author: Sarah Munro, Steve Lund

Maintainer: Sarah Munro <sarah.munro at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("erccdashboard")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("erccdashboard")

 

PDF	R Script	erccdashboard examples
PDF		Reference Manual
Text		NEWS

Details

biocViews	AlternativeSplicing, BatchEffect, DifferentialExpression, DifferentialSplicing, GeneExpression, Genetics, ImmunoOncology, Microarray, MultipleComparison, QualityControl, RNASeq, Software, Transcription, mRNAMicroarray
Version	1.30.0
In Bioconductor since	BioC 3.0 (R-3.1) (8 years)
License	GPL (>=2)
Depends	R (>= 3.2), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0)
Imports	edgeR, gplots, grid, gtools, limma, locfit, MASS, plyr, qvalue, reshape2, ROCR, scales, stringr
LinkingTo
Suggests
SystemRequirements
Enhances
URL	https://github.com/munrosa/erccdashboard http://tinyurl.com/erccsrm
BugReports	https://github.com/munrosa/erccdashboard/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	erccdashboard_1.30.0.tar.gz
Windows Binary	erccdashboard_1.30.0.zip
macOS Binary (x86_64)	erccdashboard_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/erccdashboard
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/erccdashboard
Package Short Url	https://bioconductor.org/packages/erccdashboard/
Package Downloads Report	Download Stats