ggmanh

DOI: 10.18129/B9.bioc.ggmanh    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ggmanh.

Visualization Tool for GWAS Result

Bioconductor version: 3.15

Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.

Author: John Lee [aut, cre], Xiuwen Zheng [ctb, dtc]

Maintainer: John Lee <john.lee at abbvie.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggmanh")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ggmanh")

 

HTML	R Script	Guide to ggmanh Package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Genetics, GenomeWideAssociation, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 3.15 (R-4.2) (0.5 years)
License	MIT + file LICENSE
Depends	methods, ggplot2
Imports	gdsfmt, ggrepel, grDevices, RColorBrewer, rlang, scales, SeqArray(>= 1.32.0), stats
LinkingTo
Suggests	BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), markdown, GenomicRanges
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	SAIGEgds
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ggmanh_1.0.0.tar.gz
Windows Binary	ggmanh_1.0.0.zip
macOS Binary (x86_64)	ggmanh_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ggmanh
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ggmanh
Package Short Url	https://bioconductor.org/packages/ggmanh/
Package Downloads Report	Download Stats