infinityFlow

DOI: 10.18129/B9.bioc.infinityFlow    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see infinityFlow.

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Bioconductor version: 3.15

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")

 

HTML	R Script	Basic usage of the infinityFlow package
HTML	R Script	Training non default regression models
PDF		Reference Manual

Details

biocViews	CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version	1.6.0
In Bioconductor since	BioC 3.12 (R-4.0) (2 years)
License	GPL-3
Depends	R (>= 4.0.0), flowCore
Imports	stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost
LinkingTo
Suggests	knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	infinityFlow_1.6.0.tar.gz
Windows Binary	infinityFlow_1.6.0.zip
macOS Binary (x86_64)	infinityFlow_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/infinityFlow
Package Short Url	https://bioconductor.org/packages/infinityFlow/
Package Downloads Report	Download Stats