ptairMS

DOI: 10.18129/B9.bioc.ptairMS    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see ptairMS.

Pre-processing PTR-TOF-MS Data

Bioconductor version: 3.15

This package implements a suite of methods to preprocess data from PTR-TOF-MS instruments (HDF5 format) and generates the 'sample by features' table of peak intensities in addition to the sample and feature metadata (as a singl

Author: camille Roquencourt [aut, cre]

Maintainer: camille Roquencourt <camille.roquencourt at hotmail.fr>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ptairMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ptairMS")

 

HTML	R Script	ptaiMS: Processing and analysis of PTR-TOF-MS data
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, MassSpectrometry, Metabolomics, PeakDetection, Preprocessing, Software
Version	1.4.1
In Bioconductor since	BioC 3.13 (R-4.1) (1.5 years)
License	GPL-3
Depends
Imports	Biobase, bit64, chron, data.table, doParallel, DT, enviPat, foreach, ggplot2, graphics, grDevices, ggpubr, gridExtra, Hmisc, methods, minpack.lm, MSnbase, parallel, plotly, rhdf5, rlang, Rcpp, shiny, shinyscreenshot, signal, scales, stats, utils
LinkingTo	Rcpp
Suggests	knitr, rmarkdown, BiocStyle, testthat (>= 2.1.0), ptairData, ropls
SystemRequirements
Enhances
URL
BugReports	https://github.com/camilleroquencourt/ptairMS/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ptairMS_1.4.1.tar.gz
Windows Binary	ptairMS_1.4.1.zip
macOS Binary (x86_64)	ptairMS_1.4.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ptairMS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ptairMS
Package Short Url	https://bioconductor.org/packages/ptairMS/
Package Downloads Report	Download Stats