qckitfastq

DOI: 10.18129/B9.bioc.qckitfastq    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see qckitfastq.

FASTQ Quality Control

Bioconductor version: 3.15

Assessment of FASTQ file format with multiple metrics including quality score, sequence content, overrepresented sequence and Kmers.

Author: Wenyue Xing [aut], August Guang [aut, cre]

Maintainer: August Guang <august.guang at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("qckitfastq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("qckitfastq")

 

PDF	R Script	Quality control analysis and visualization using qckitfastq
PDF		Reference Manual
Text		NEWS

Details

biocViews	QualityControl, Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 3.9 (R-3.6) (3.5 years)
License	Artistic-2.0
Depends
Imports	magrittr, ggplot2, dplyr, seqTools, zlibbioc, data.table, reshape2, grDevices, graphics, stats, utils, Rcpp, rlang, RSeqAn
LinkingTo	Rcpp, RSeqAn
Suggests	knitr, rmarkdown, kableExtra, testthat
SystemRequirements	GNU make
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	qckitfastq_1.12.0.tar.gz
Windows Binary	qckitfastq_1.12.0.zip
macOS Binary (x86_64)	qckitfastq_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/qckitfastq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/qckitfastq
Package Short Url	https://bioconductor.org/packages/qckitfastq/
Package Downloads Report	Download Stats