SNPlocs.Hsapiens.dbSNP.20101109

DOI: 10.18129/B9.bioc.SNPlocs.Hsapiens.dbSNP.20101109    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP.20101109.

SNP locations for Homo sapiens (dbSNP Build 132)

Bioconductor version: 3.15

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).

Author: Hervé Pagès

Maintainer: H. Pagès <hpages.on.github at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP.20101109")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens, SNPlocs
Version	0.99.9
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges
Imports	methods, S4Vectors, IRanges, GenomicRanges
LinkingTo
Suggests	Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	VariantAnnotation
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SNPlocs.Hsapiens.dbSNP.20101109_0.99.9.tar.gz
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macOS Binary (x86_64)
Package Short Url	https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP.20101109/
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