chromhmmData

DOI: 10.18129/B9.bioc.chromhmmData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see chromhmmData.

Chromosome Size, Coordinates and Anchor Files

Bioconductor version: 3.15

Annotation files of the formatted genomic annotation for ChromHMM. Three types of text files are included the chromosome sizes, region coordinates and anchors specifying the transcription start and end sites. The package includes data for two versions of the genome of humans and mice.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromhmmData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromhmmData")

 

HTML	R Script	chromhmmData
PDF		Reference Manual
Text		NEWS

Details

biocViews	AnnotationData, Homo_sapiens, Mus_musculus
Version	0.99.2
License	GPL-3
Depends	R (>= 4.1)
Imports
LinkingTo
Suggests	rmarkdown, knitr
SystemRequirements
Enhances
URL
BugReports	https://github.com/MahShaaban/chromhmmData/issues
Depends On Me
Imports Me	segmenter
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chromhmmData_0.99.2.tar.gz
Windows Binary
macOS Binary (x86_64)
Package Short Url	https://bioconductor.org/packages/chromhmmData/
Package Downloads Report	Download Stats