BeadSorted.Saliva.EPIC

DOI: 10.18129/B9.bioc.BeadSorted.Saliva.EPIC    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see BeadSorted.Saliva.EPIC.

Illumina EPIC data on BeadSorted adult saliva cells

Bioconductor version: 3.15

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from saples assayed by Lauren Middleton et. al. (2021).

Author: Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]

Maintainer: Jonah Fisher <jazzfish at umich.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BeadSorted.Saliva.EPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BeadSorted.Saliva.EPIC")

 

HTML	R Script	BeadSorted.Saliva.EPIC.html
PDF		Reference Manual

Details

biocViews	ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version	1.4.0
License	GPL-3
Depends	R (>= 4.1), minfi(>= 1.36.0), ExperimentHub
Imports
LinkingTo
Suggests	knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BeadSorted.Saliva.EPIC_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/BeadSorted.Saliva.EPIC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BeadSorted.Saliva.EPIC
Package Short Url	https://bioconductor.org/packages/BeadSorted.Saliva.EPIC/
Package Downloads Report	Download Stats