PhyloProfileData

DOI: 10.18129/B9.bioc.PhyloProfileData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see PhyloProfileData.

Data package for phylogenetic profile analysis using PhyloProfile tool

Bioconductor version: 3.15

Two experimental datasets to illustrate running and analysing phylogenetic profiles with PhyloProfile package.

Author: Vinh Tran [aut, cre], Ingo Ebersberger [aut], Hannah Mülbaier [ctb], Arpit Jain [ctb]

Maintainer: Vinh Tran <tran at bio.uni-frankfurt.de>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PhyloProfileData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PhyloProfileData")

 

HTML	R Script	PhyloProfileData
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ReproducibleResearch
Version	1.10.0
License	MIT + file LICENSE
Depends	R (>= 4.1.0)
Imports	ExperimentHub, Biostrings, BiocStyle
LinkingTo
Suggests	knitr, rmarkdown, markdown
SystemRequirements
Enhances
URL	https://github.com/BIONF/PhyloProfileData
BugReports	https://github.com/trvinh/PhyloProfileData/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PhyloProfileData_1.10.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/PhyloProfileData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/PhyloProfileData
Package Short Url	https://bioconductor.org/packages/PhyloProfileData/
Package Downloads Report	Download Stats