VectraPolarisData

DOI: 10.18129/B9.bioc.VectraPolarisData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see VectraPolarisData.

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Bioconductor version: 3.15

Provides two multiplex imaging datasets collected on Vectra instruments at the University of Colorado Anschutz Medical Campus. Data are provided as a Spatial Experiment objects. Data is provided in tabular form and has been segmented and phenotyped using Inform software. Raw .tiff files are not included.

Author: Wrobel Julia [aut, cre] , Tusharkanti Ghosh [aut]

Maintainer: Wrobel Julia <julia.wrobel at cuanschutz.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("VectraPolarisData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("VectraPolarisData")

 

HTML	R Script	VectraPolarisData
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExperimentHub, Homo_sapiens_Data, ReproducibleResearch, SingleCellData, SpatialData
Version	1.0.0
License	Artistic-2.0
Depends	ExperimentHub, SpatialExperiment, utils
Imports
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, dplyr
SystemRequirements
Enhances
URL	https://github.com/julia-wrobel/VectraPolarisData
BugReports	https://support.bioconductor.org/t/VectraPolarisData
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	VectraPolarisData_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/VectraPolarisData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/VectraPolarisData
Package Short Url	https://bioconductor.org/packages/VectraPolarisData/
Package Downloads Report	Download Stats