macrophage

DOI: 10.18129/B9.bioc.macrophage    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see macrophage.

Human macrophage immune response

Bioconductor version: 3.15

This package provides the output of running Salmon on a set of 24 RNA-seq samples from Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", published in Nature Genetics, January 2018. For details on version numbers and how the samples were processed see the package vignette.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("macrophage")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("macrophage")

 

HTML	R Script	Salmon quantifications for human macrophage immune response experiment
PDF		Reference Manual

Details

biocViews	ExperimentData, RNASeqData, SequencingData
Version	1.12.0
License	GPL (>= 2)
Depends	R (>= 3.5.0)
Imports
LinkingTo
Suggests	knitr, markdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	fishpond, fluentGenomics, GeneTonic, quantiseqr
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	macrophage_1.12.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/macrophage
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/macrophage
Package Short Url	https://bioconductor.org/packages/macrophage/
Package Downloads Report	Download Stats