ASICS

DOI: 10.18129/B9.bioc.ASICS  

Automatic Statistical Identification in Complex Spectra

Bioconductor version: Release (3.16)

With a set of pure metabolite reference spectra, ASICS quantifies concentration of metabolites in a complex spectrum. The identification of metabolites is performed by fitting a mixture model to the spectra of the library with a sparse penalty. The method and its statistical properties are described in Tardivel et al. (2017) .

Author: Gaëlle Lefort [aut, cre], Rémi Servien [aut], Patrick Tardivel [aut], Nathalie Vialaneix [aut]

Maintainer: Gaëlle Lefort <gaelle.lefort at inrae.fr>

Citation (from within R, enter citation("ASICS")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ASICS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASICS")

 

HTML R Script ASICS
HTML R Script ASICS
PDF   Reference Manual
Text   NEWS

Details

biocViews Cheminformatics, DataImport, Metabolomics, Software
Version 2.14.0
In Bioconductor since BioC 3.7 (R-3.5) (5 years)
License GPL (>= 2)
Depends R (>= 3.5)
Imports BiocParallel, ggplot2, glmnet, grDevices, gridExtra, methods, mvtnorm, PepsNMR, plyr, quadprog, ropls, stats, SummarizedExperiment, utils, Matrix, zoo
LinkingTo
Suggests knitr, rmarkdown, BiocStyle, testthat, ASICSdata
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ASICS_2.14.0.tar.gz
Windows Binary ASICS_2.14.0.zip
macOS Binary (x86_64) ASICS_2.14.0.tgz
macOS Binary (arm64) ASICS_2.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ASICS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ASICS
Bioc Package Browser https://code.bioconductor.org/browse/ASICS/
Package Short Url https://bioconductor.org/packages/ASICS/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: