GEOsubmission

DOI: 10.18129/B9.bioc.GEOsubmission  

Prepares microarray data for submission to GEO

Bioconductor version: Release (3.16)

Helps to easily submit a microarray dataset and the associated sample information to GEO by preparing a single file for upload (direct deposit).

Author: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Maintainer: Alexandre Kuhn <alexandre.m.kuhn at gmail.com>

Citation (from within R, enter citation("GEOsubmission")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GEOsubmission")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOsubmission")

 

PDF R Script GEOsubmission Overview
PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.50.0
In Bioconductor since BioC 2.6 (R-2.11) (13 years)
License GPL (>= 2)
Depends
Imports affy, Biobase, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GEOsubmission_1.50.0.tar.gz
Windows Binary GEOsubmission_1.50.0.zip
macOS Binary (x86_64) GEOsubmission_1.50.0.tgz
macOS Binary (arm64) GEOsubmission_1.50.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GEOsubmission
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GEOsubmission
Bioc Package Browser https://code.bioconductor.org/browse/GEOsubmission/
Package Short Url https://bioconductor.org/packages/GEOsubmission/
Package Downloads Report Download Stats

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