SELEX

DOI: 10.18129/B9.bioc.SELEX  

Functions for analyzing SELEX-seq data

Bioconductor version: Release (3.16)

Tools for quantifying DNA binding specificities based on SELEX-seq data.

Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker

Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>

Citation (from within R, enter citation("SELEX")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SELEX")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SELEX")

 

PDF R Script Motif Discovery with SELEX-seq
PDF   Reference Manual

Details

biocViews GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription
Version 1.30.0
In Bioconductor since BioC 3.1 (R-3.2) (8 years)
License GPL (>=2)
Depends rJava (>= 0.5-0), Biostrings(>= 2.26.0)
Imports stats, utils
LinkingTo
Suggests
SystemRequirements Java (>= 1.5)
Enhances
URL https://bussemakerlab.org/site/software/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SELEX_1.30.0.tar.gz
Windows Binary SELEX_1.30.0.zip (64-bit only)
macOS Binary (x86_64) SELEX_1.30.0.tgz
macOS Binary (arm64) SELEX_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SELEX
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SELEX
Bioc Package Browser https://code.bioconductor.org/browse/SELEX/
Package Short Url https://bioconductor.org/packages/SELEX/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: