apComplex

DOI: 10.18129/B9.bioc.apComplex  

Estimate protein complex membership using AP-MS protein data

Bioconductor version: Release (3.16)

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Citation (from within R, enter citation("apComplex")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("apComplex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apComplex")

 

PDF R Script apComplex
PDF   Reference Manual

Details

biocViews GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version 2.64.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 18 years)
License LGPL
Depends R (>= 2.10), graph, RBGL
Imports Rgraphviz, stats, org.Sc.sgd.db
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package apComplex_2.64.0.tar.gz
Windows Binary apComplex_2.64.0.zip
macOS Binary (x86_64) apComplex_2.64.0.tgz
macOS Binary (arm64) apComplex_2.64.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/apComplex
Bioc Package Browser https://code.bioconductor.org/browse/apComplex/
Package Short Url https://bioconductor.org/packages/apComplex/
Package Downloads Report Download Stats

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