cbaf

DOI: 10.18129/B9.bioc.cbaf  

Automated functions for comparing various omic data from cbioportal.org

Bioconductor version: Release (3.16)

This package contains functions that allow analysing and comparing omic data across various cancers/cancer subgroups easily. So far, it is compatible with RNA-seq, microRNA-seq, microarray and methylation datasets that are stored on cbioportal.org.

Author: Arman Shahrisa [aut, cre, cph], Maryam Tahmasebi Birgani [aut]

Maintainer: Arman Shahrisa <shahrisa.arman at hotmail.com>

Citation (from within R, enter citation("cbaf")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cbaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cbaf")

 

HTML R Script cbaf
PDF   Reference Manual
Text   NEWS

Details

biocViews AssayDomain, BiomedicalInformatics, ComparativeGenomics, DNAMethylation, Epigenetics, GeneExpression, Genetics, Microarray, ResearchField, Software, Transcription, Transcriptomics
Version 1.20.1
In Bioconductor since BioC 3.6 (R-3.4) (5.5 years)
License Artistic-2.0
Depends R (>= 4.1)
Imports BiocFileCache, RColorBrewer, cBioPortalData, genefilter, gplots, grDevices, stats, utils, openxlsx
LinkingTo
Suggests knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cbaf_1.20.1.tar.gz
Windows Binary cbaf_1.20.1.zip
macOS Binary (x86_64) cbaf_1.20.1.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/cbaf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cbaf
Bioc Package Browser https://code.bioconductor.org/browse/cbaf/
Package Short Url https://bioconductor.org/packages/cbaf/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.16 Source Archive

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