Collado-Torres L, Frazee AC, Love MI, Irizarry RA, Jaffe AE and Leek JT (2015). “derfinder: Software for annotation-agnostic RNA-seq differential expression analysis.” bioRxiv. http://doi.org/10.1101/015370, http://www.biorxiv.org/content/early/2015/02/19/015370.abstract.

Frazee AC, Sabunciyan S, Hansen KD, Irizarry RA and Leek JT (2014). “Differential expression analysis of RNA-seq data at single-base resolution.” Biostatistics, 15 (3), pp. 413-426. http://doi.org/10.1093/biostatistics/kxt053, http://biostatistics.oxfordjournals.org/content/15/3/413.long.