This package defines an AnnotationHub resource representing multiple ontologies.
## Loading required package: BiocGenerics##
## Attaching package: 'BiocGenerics'## The following objects are masked from 'package:stats':
##
## IQR, mad, sd, var, xtabs## The following objects are masked from 'package:base':
##
## Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
## as.data.frame, basename, cbind, colnames, dirname, do.call,
## duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
## lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
## pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
## tapply, union, unique, unsplit, which.max, which.min## Loading required package: BiocFileCache## Loading required package: dbplyr## snapshotDate(): 2022-10-18## AnnotationHub with 29 records
## # snapshotDate(): 2022-10-18
## # $dataprovider: NA
## # $species: NA
## # $rdataclass: Rda
## # additional mcols(): taxonomyid, genome, description,
## # coordinate_1_based, maintainer, rdatadateadded, preparerclass, tags,
## # rdatapath, sourceurl, sourcetype
## # retrieve records with, e.g., 'object[["AH97934"]]'
##
## title
## AH97934 | caro
## AH97935 | cellLineOnto
## AH97936 | cellOnto
## AH97937 | cellosaurusOnto
## AH97938 | chebi_full
## ... ...
## AH107277 | hcaoOnto_2022.07.19
## AH107278 | mondo_2022.08.01
## AH107279 | patoOnto_2022.08.10
## AH107280 | PROnto_67
## AH107281 | uberon_2022.06.30## [1] "AH97934"Session information
## R version 4.2.1 (2022-06-23)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.5 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.16-bioc/R/lib/libRblas.so
## LAPACK: /home/biocbuild/bbs-3.16-bioc/R/lib/libRlapack.so
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] AnnotationHub_3.5.2 BiocFileCache_2.5.2 dbplyr_2.2.1
## [4] BiocGenerics_0.43.4 BiocStyle_2.25.0
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.9 png_0.1-7
## [3] Biostrings_2.65.6 assertthat_0.2.1
## [5] digest_0.6.30 utf8_1.2.2
## [7] mime_0.12 R6_2.5.1
## [9] GenomeInfoDb_1.33.12 stats4_4.2.1
## [11] RSQLite_2.2.18 evaluate_0.17
## [13] httr_1.4.4 pillar_1.8.1
## [15] zlibbioc_1.43.0 rlang_1.0.6
## [17] curl_4.3.3 jquerylib_0.1.4
## [19] blob_1.2.3 S4Vectors_0.35.4
## [21] rmarkdown_2.17 stringr_1.4.1
## [23] RCurl_1.98-1.9 bit_4.0.4
## [25] shiny_1.7.2 compiler_4.2.1
## [27] httpuv_1.6.6 xfun_0.33
## [29] pkgconfig_2.0.3 htmltools_0.5.3
## [31] tidyselect_1.2.0 KEGGREST_1.37.3
## [33] GenomeInfoDbData_1.2.9 tibble_3.1.8
## [35] interactiveDisplayBase_1.35.1 bookdown_0.29
## [37] IRanges_2.31.2 fansi_1.0.3
## [39] withr_2.5.0 crayon_1.5.2
## [41] dplyr_1.0.10 later_1.3.0
## [43] bitops_1.0-7 rappdirs_0.3.3
## [45] jsonlite_1.8.2 xtable_1.8-4
## [47] lifecycle_1.0.3 DBI_1.1.3
## [49] magrittr_2.0.3 cli_3.4.1
## [51] stringi_1.7.8 cachem_1.0.6
## [53] XVector_0.37.1 promises_1.2.0.1
## [55] bslib_0.4.0 ellipsis_0.3.2
## [57] filelock_1.0.2 generics_0.1.3
## [59] vctrs_0.4.2 tools_4.2.1
## [61] bit64_4.0.5 Biobase_2.57.1
## [63] glue_1.6.2 purrr_0.3.5
## [65] BiocVersion_3.16.0 fastmap_1.1.0
## [67] yaml_2.3.6 AnnotationDbi_1.59.1
## [69] BiocManager_1.30.18 memoise_2.0.1
## [71] knitr_1.40 sass_0.4.2