ReactomeContentService4R
This is the development version of ReactomeContentService4R; for the stable release version, see ReactomeContentService4R.
Interface for the Reactome Content Service
Bioconductor version: Development (3.21)
Reactome is a free, open-source, open access, curated and peer-reviewed knowledgebase of bio-molecular pathways. This package is to interact with the Reactome Content Service API. Pre-built functions would allow users to retrieve data and images that consist of proteins, pathways, and other molecules related to a specific gene or entity in Reactome.
Author: Chi-Lam Poon [aut, cre] (ORCID:
Maintainer: Chi-Lam Poon <clpoon807 at gmail.com>
citation("ReactomeContentService4R")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ReactomeContentService4R")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Pathways, Reactome, Software |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | Apache License (>= 2.0) | file LICENSE |
| Depends | |
| Imports | httr, jsonlite, utils, magick (>= 2.5.1), data.table, doParallel, foreach, parallel |
| System Requirements | |
| URL | https://github.com/reactome/ReactomeContentService4R |
| Bug Reports | https://github.com/reactome/ReactomeContentService4R/issues |
See More
| Suggests | pdftools, testthat, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ReactomeContentService4R |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ReactomeContentService4R |
| Package Short Url | https://bioconductor.org/packages/ReactomeContentService4R/ |
| Package Downloads Report | Download Stats |