To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ASpli")

In most cases, you don't need to download the package archive at all.

ASpli

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ASpli.

Analysis of alternative splicing using RNA-Seq

Bioconductor version: 3.4

Integrative pipeline for the analyisis of alternative splicing using RNAseq.

Author: Estefania Mancini, Marcelo Yanovsky and Ariel Chernomoretz

Maintainer: Estefania Mancini <emancini at leloir.org.ar>

Citation (from within R, enter citation("ASpli")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ASpli")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ASpli")

PDF	R Script	Analysis of alternative splicing using ASpli
PDF		Reference Manual
Text		NEWS

biocViews	Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, RNASeq, Sequencing, Software, TimeCourse, Transcription
Version	1.0.0
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	GPL
Depends	methods, GenomicRanges, GenomicFeatures, edgeR, BiocGenerics, IRanges, GenomicAlignments, DESeq2, DEXSeq, Gviz, grDevices, stats, utils, S4Vectors, AnnotationDbi, parallel
Imports
LinkingTo
Suggests	RNAseqData.HNRNPC.bam.chr14, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	ASpli_1.0.0.tar.gz
Windows Binary	ASpli_1.0.0.zip
Mac OS X 10.9 (Mavericks)	ASpli_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/ASpli/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/ASpli/
Package Downloads Report	Download Stats

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