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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")
In most cases, you don't need to download the package archive at all.
ComplexHeatmap
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.
Making Complex Heatmaps
Bioconductor version: 3.4
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R,
enter citation("ComplexHeatmap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ComplexHeatmap")
Documentation
| HTML | R Script | 1. Introduction to ComplexHeatmap package |
| HTML | R Script | 2. Making a single heatmap |
| HTML | R Script | 3. Making a list of Heatmaps |
| HTML | R Script | 4. Heatmap Annotations |
| HTML | R Script | 5. Heatmap and Annotation Legends |
| HTML | R Script | 6. Heatmap Decoration |
| HTML | R Script | 7. Interactive with Heatmaps |
| HTML | R Script | 8. OncoPrint |
| HTML | R Script | 9. More Examples |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (2 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), grid, graphics, stats, grDevices |
| Imports | methods, circlize (>= 0.3.4), GetoptLong, colorspace, RColorBrewer, dendextend (>= 1.0.1), GlobalOptions (>= 0.0.10) |
| LinkingTo | |
| Suggests | testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/jokergoo/ComplexHeatmap |
| Depends On Me | EnrichedHeatmap, recoup |
| Imports Me | EnrichmentBrowser, fCCAC, maftools, TCGAbiolinks, YAPSA |
| Suggests Me | gtrellis, HilbertCurve |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ComplexHeatmap_1.12.0.tar.gz |
| Windows Binary | ComplexHeatmap_1.12.0.zip |
| Mac OS X 10.9 (Mavericks) | ComplexHeatmap_1.12.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ComplexHeatmap/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |
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