To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FitHiC")
In most cases, you don't need to download the package archive at all.
FitHiC
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see FitHiC.
Confidence estimation for intra-chromosomal contact maps
Bioconductor version: 3.4
Fit-Hi-C is a tool for assigning statistical confidence estimates to intra-chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
Author: Ferhat Ay [aut] (Python original, https://noble.gs.washington.edu/proj/fit-hi-c/), Timothy L. Bailey [aut], William S. Noble [aut], Ruyu Tan [aut, cre, trl] (R port)
Maintainer: Ruyu Tan <rut003 at ucsd.edu>
Citation (from within R,
enter citation("FitHiC")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("FitHiC")
Documentation
| HTML | R Script | Vignette Title |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DNA3DStructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | data.table, fdrtool, grDevices, graphics, Rcpp, stats, utils |
| LinkingTo | Rcpp |
| Suggests | knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | FitHiC_1.0.0.tar.gz |
| Windows Binary | FitHiC_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | FitHiC_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/FitHiC/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/FitHiC/ |
| Package Downloads Report | Download Stats |
Documentation »
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