To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PGSEA")

In most cases, you don't need to download the package archive at all.

PGSEA

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see PGSEA.

Parametric Gene Set Enrichment Analysis

Bioconductor version: 3.4

Parametric Analysis of Gene Set Enrichment

Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>

Maintainer: Karl Dykema <karl.dykema at vai.org>

Citation (from within R, enter citation("PGSEA")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PGSEA")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PGSEA")

PDF	R Script	HOWTO: PGSEA
PDF	R Script	HOWTO: PGSEA Example Workflow
PDF		Reference Manual

biocViews	Microarray, Software
Version	1.48.0
In Bioconductor since	BioC 2.0 (R-2.5) (10 years)
License	GPL-2
Depends	R (>= 2.10), GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5)
Imports
LinkingTo
Suggests	GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma
SystemRequirements
Enhances
URL
Depends On Me	GeneExpressionSignature
Imports Me
Suggests Me	gskb
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	PGSEA_1.48.0.tar.gz
Windows Binary	PGSEA_1.48.0.zip
Mac OS X 10.9 (Mavericks)	PGSEA_1.48.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/PGSEA/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/PGSEA/
Package Downloads Report	Download Stats

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