To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")

In most cases, you don't need to download the package archive at all.

StarBioTrek

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see StarBioTrek.

StarBioTrek

Bioconductor version: 3.4

This tool StarBioTrek presents some methodologies to measure pathway activity and cross-talk among pathways integrating also the information of network data.

Author: Claudia Cava, Isabella Castiglioni

Maintainer: Claudia Cava <claudia.cava at ibfm.cnr.it>

Citation (from within R, enter citation("StarBioTrek")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("StarBioTrek")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("StarBioTrek")

PDF	R Script	StarBioTrek:Application Examples
HTML	R Script	Vignette Title
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneRegulation, KEGG, Network, Pathways, Software
Version	1.0.3
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	GPL (>= 3)
Depends	R (>= 3.3)
Imports	SpidermiR, KEGGREST, org.Hs.eg.db, AnnotationDbi, e1071, ROCR, grDevices, igraph
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, devtools, roxygen2, qgraph, png, grid
SystemRequirements
Enhances
URL	https://github.com/claudiacava/StarBioTrek
BugReports	https://github.com/claudiacava/StarBioTrek/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	StarBioTrek_1.0.3.tar.gz
Windows Binary	StarBioTrek_1.0.3.zip
Mac OS X 10.9 (Mavericks)	StarBioTrek_1.0.3.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/StarBioTrek/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/StarBioTrek/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

Package vignettes and manuals.
Workflows for learning and use.
Course and conference material.
Videos.
Community resources and tutorials.

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Support site - for questions about Bioconductor packages
Bioc-devel mailing list - for package developers