- Home
- Bioconductor 3.4
- Software Packages
- pathVar
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathVar")
In most cases, you don't need to download the package archive at all.
pathVar
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see pathVar.
Methods to Find Pathways with Significantly Different Variability
Bioconductor version: 3.4
This package contains the functions to find the pathways that have significantly different variability than a reference gene set. It also finds the categories from this pathway that are significant where each category is a cluster of genes. The genes are separated into clusters by their level of variability.
Author: Laurence de Torrente, Samuel Zimmerman, Jessica Mar
Maintainer: Samuel Zimmerman <sezimmer at einstein.yu.edu>
Citation (from within R,
enter citation("pathVar")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("pathVar")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pathVar")
| R Script | Tutorial on How to Use the Functions in the \texttt{PathVar} Package | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneSetEnrichment, GeneticVariability, Pathways, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.3.0), methods, ggplot2, gridExtra |
| Imports | EMT, mclust, Matching, data.table, stats, grDevices, graphics, utils |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pathVar_1.4.0.tar.gz |
| Windows Binary | pathVar_1.4.0.zip |
| Mac OS X 10.9 (Mavericks) | pathVar_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/pathVar/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/pathVar/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
