To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regsplice")

In most cases, you don't need to download the package archive at all.

regsplice

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see regsplice.

Lasso-Based Methods for Detection of Differential Exon Usage

Bioconductor version: 3.4

Statistical methods for detection of differential exon usage in RNA-seq and exon microarray data sets, using L1 regularization (lasso) to improve power.

Author: Lukas M. Weber [aut, cre]

Maintainer: Lukas M. Weber <lukmweber at gmail.com>

Citation (from within R, enter citation("regsplice")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("regsplice")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("regsplice")

PDF	R Script	Example workflow for regsplice package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	AlternativeSplicing, DifferentialExpression, DifferentialSplicing, ExonArray, ExperimentalDesign, Microarray, RNASeq, Sequencing, Software
Version	1.0.0
In Bioconductor since	BioC 3.4 (R-3.3) (0.5 years)
License	MIT + file LICENSE
Depends
Imports	glmnet, SummarizedExperiment, S4Vectors, BiocParallel, limma, edgeR, stats, utils, methods
LinkingTo
Suggests	testthat, BiocStyle, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/lmweber/regsplice
BugReports	https://github.com/lmweber/regsplice/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	regsplice_1.0.0.tar.gz
Windows Binary	regsplice_1.0.0.zip
Mac OS X 10.9 (Mavericks)	regsplice_1.0.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/regsplice/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/regsplice/
Package Downloads Report	Download Stats

Documentation »

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