To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")

In most cases, you don't need to download the package archive at all.

spade

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of spade; for the stable release version, see spade.

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: Development (3.4)

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson

Maintainer: Zach Bjornson <bjornson at stanford.edu>

Citation (from within R, enter citation("spade")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("spade")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spade")

PDF	R Script	spade package
PDF		Reference Manual

Details

biocViews	Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization
Version	1.19.1
In Bioconductor since	BioC 2.10 (R-2.15) (4.5 years)
License	GPL-2
Depends	R (>= 2.11), igraph, Rclusterpp
Imports	Biobase, flowCore
LinkingTo
Suggests	flowViz
SystemRequirements
Enhances
URL	http://cytospade.org
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	spade_1.19.1.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/spade
Package Short Url	http://bioconductor.org/packages/spade/
Package Downloads Report	Download Stats

Documentation »

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