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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AMOUNTAIN")
In most cases, you don't need to download the package archive at all.
AMOUNTAIN
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Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
Bioconductor version: Release (3.5)
A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. AMOUNTAIN aims to search active modules in multi-layer WGCN using a continuous optimization approach.
Author: Dong Li, Shan He, Zhisong Pan and Guyu Hu
Maintainer: Dong Li <dxl466 at cs.bham.ac.uk>
Citation (from within R,
enter citation("AMOUNTAIN")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AMOUNTAIN")
Documentation
| HTML | R Script | Vignette Title |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Network, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3.0) |
| Imports | stats |
| LinkingTo | |
| Suggests | BiocStyle, qgraph, knitr, rmarkdown |
| SystemRequirements | gsl |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | MODA |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AMOUNTAIN_1.2.0.tar.gz |
| Windows Binary | AMOUNTAIN_1.2.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | AMOUNTAIN_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AMOUNTAIN |
| Package Short Url | http://bioconductor.org/packages/AMOUNTAIN/ |
| Package Downloads Report | Download Stats |
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