To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BgeeDB")
In most cases, you don't need to download the package archive at all.
BgeeDB
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Annotation and gene expression data retrieval from Bgee database
Bioconductor version: Release (3.5)
A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.
Author: Andrea Komljenovic [aut, cre], Julien Roux [aut, cre]
Maintainer: Andrea Komljenovic <andreakomljenovic at gmail.com>, Frederic Bastian <bgee at sib.swiss>
Citation (from within R,
enter citation("BgeeDB")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BgeeDB")
Documentation
| HTML | R Script | Vignette Title |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DataImport, GO, GeneExpression, GeneSetEnrichment, Microarray, Sequencing, Software |
| Version | 2.2.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (1.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.3.0), topGO, tidyr |
| Imports | data.table, RCurl, digest, methods, stats, utils, dplyr, graph, Biobase |
| LinkingTo | |
| Suggests | knitr, BiocStyle, testthat, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | psygenet2r |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BgeeDB_2.2.0.tar.gz |
| Windows Binary | BgeeDB_2.2.0.zip |
| Mac OS X 10.11 (El Capitan) | BgeeDB_2.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BgeeDB |
| Package Short Url | http://bioconductor.org/packages/BgeeDB/ |
| Package Downloads Report | Download Stats |
Documentation »
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