To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiGGR")
In most cases, you don't need to download the package archive at all.
BiGGR
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Constraint based modeling in R using metabolic reconstruction databases
Bioconductor version: Release (3.5)
This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.
Author: Anand K. Gavai, Hannes Hettling
Maintainer: Anand K. Gavai <anand.gavai at bioinformatics.nl>, Hannes Hettling <hannes.hettling at naturalis.nl>
Citation (from within R,
enter citation("BiGGR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiGGR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiGGR")
| R Script | BiGGR | |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | GraphAndNetwork, Metabolomics, Network, Pathway, Software, Systems Biology, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (4 years) |
| License | file LICENSE |
| Depends | R (>= 2.14.0), rsbml, hyperdraw, LIM, stringr |
| Imports | hypergraph, limSolve |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bioconductor.org/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BiGGR_1.12.0.tar.gz |
| Windows Binary | BiGGR_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | BiGGR_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BiGGR |
| Package Short Url | http://bioconductor.org/packages/BiGGR/ |
| Package Downloads Report | Download Stats |
Documentation »
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