To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioCor")
In most cases, you don't need to download the package archive at all.
BioCor
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Functional similarities
Bioconductor version: Release (3.5)
Calculates functional similarities based on the pathways described on KEGG and REACTOME or in gene sets. These similarities can be calculated for pathways or gene sets, genes, or clusters and combined with other similarities. They can be used to improve networks, gene selection, testing relationships...
Author: Lluís Revilla Sancho <lluis.revilla at gmail.com>
Maintainer: Lluís Revilla Sancho <lluis.revilla at gmail.com>
Citation (from within R,
enter citation("BioCor")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BioCor")
Documentation
| HTML | R Script | BioCor |
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Clustering, GeneExpression, KEGG, Network, Pathways, Reactome, Software, StatisticalMethod |
| Version | 1.0.1 |
| In Bioconductor since | BioC 3.5 (R-3.4) (0.5 years) |
| License | GPL-3 | file LICENSE |
| Depends | R (>= 3.4.0) |
| Imports | org.Hs.eg.db, AnnotationDbi, reactome.db, graph, methods, utils |
| LinkingTo | |
| Suggests | WGCNA, testthat, knitr, rmarkdown, BiocStyle, GOSemSim, GSEABase |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/llrs/BioCor/ |
| BugReports | https://github.com/llrs/BioCor/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioCor_1.0.1.tar.gz |
| Windows Binary | BioCor_1.0.1.zip |
| Mac OS X 10.11 (El Capitan) | BioCor_1.0.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BioCor |
| Package Short Url | http://bioconductor.org/packages/BioCor/ |
| Package Downloads Report | Download Stats |
Documentation »
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