To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GoogleGenomics")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
Provides an R package to interact with the Google Genomics API.
Author: Cassie Doll [aut], Nicole Deflaux [aut], Siddhartha Bagaria [aut, cre]
Maintainer: Siddhartha Bagaria <sidb at google.com>
Citation (from within R,
enter citation("GoogleGenomics")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GoogleGenomics")
HTML | R Script | Annotating Variants |
HTML | R Script | Plotting Alignments |
HTML | R Script | Reproducing Variant Annotation Results |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | DataImport, Genetics, Software, ThirdPartyClient |
Version | 1.8.1 |
In Bioconductor since | BioC 3.1 (R-3.2) (2.5 years) |
License | Apache License (== 2.0) | file LICENSE |
Depends | R (>= 3.1.0), GenomicAlignments(>= 1.0.1), VariantAnnotation |
Imports | Biostrings, GenomeInfoDb, GenomicRanges, IRanges, httr, rjson, Rsamtools, S4Vectors(>= 0.9.25), Biobase, methods |
LinkingTo | |
Suggests | BiocStyle, httpuv, knitr, rmarkdown, testthat, ggbio, ggplot2, BSgenome.Hsapiens.UCSC.hg19, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
SystemRequirements | |
Enhances | |
URL | https://cloud.google.com/genomics/ |
BugReports | https://github.com/Bioconductor/GoogleGenomics/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | GoogleGenomics_1.8.1.tar.gz |
Windows Binary | GoogleGenomics_1.8.1.zip |
Mac OS X 10.11 (El Capitan) | GoogleGenomics_1.8.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/GoogleGenomics |
Package Short Url | http://bioconductor.org/packages/GoogleGenomics/ |
Package Downloads Report | Download Stats |
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