To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("KEGGlincs")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.5)
See what is going on 'under the hood' of KEGG pathways by explicitly re-creating the pathway maps from information obtained from KGML files.
Author: Shana White
Maintainer: Shana White <vandersm at mail.uc.edu>, Mario Medvedovic <medvedm at ucmail.uc.edu>
Citation (from within R,
enter citation("KEGGlincs")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("KEGGlincs")
HTML | R Script | KEGGlincs Workflows |
HTML | R Script | KEGGlincs Workflows |
Reference Manual | ||
Text | NEWS |
biocViews | CellBiology, DataRepresentation, GeneExpression, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Software, ThirdPartyClient |
Version | 1.2.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (1 year) |
License | GPL-3 |
Depends | R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db(>= 3.3.0) |
Imports | AnnotationDbi, KEGGgraph, igraph, plyr, gtools, httr, RJSONIO, KEGGREST, methods, graphics, stats, utils, XML |
LinkingTo | |
Suggests | BiocInstaller(>= 1.20.3), knitr, graph |
SystemRequirements | Cytoscape (>= 3.3.0), Java (>= 8) |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | KEGGlincs_1.2.0.tar.gz |
Windows Binary | KEGGlincs_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | KEGGlincs_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/KEGGlincs |
Package Short Url | http://bioconductor.org/packages/KEGGlincs/ |
Package Downloads Report | Download Stats |
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